Homer de novo Motif Results (AR_MotifOutput//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
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More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 64559
Total background sequences = 62000
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G T A 1e-6979-1.607e+0453.04%20.91%50.9bp (63.4bp)FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer(0.982)
More Information | Similar Motifs Found
motif file (matrix)
2 C G T A A G T C G C T A A T C G C G A T T C A G G C A T A C T G G A C T C G A T G A T C G A C T 1e-4422-1.018e+0427.26%8.22%46.2bp (67.3bp)PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer(0.914)
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motif file (matrix)
3 A C G T A C G T C G A T C G T A A G C T C G A T C T A G A T C G 1e-923-2.128e+0323.06%13.56%54.9bp (60.7bp)HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer(0.924)
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motif file (matrix)
4 A G T C C G A T A C T G A T G C A G T C C G T A C T G A C T A G C G T A A T G C 1e-913-2.104e+0326.85%16.69%54.3bp (64.3bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.982)
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motif file (matrix)
5 G A C T G T C A G T C A C T G A A G C T G T C A A C G T A C G T C A G T C T A G 1e-896-2.065e+037.33%2.49%55.1bp (60.3bp)Arid5a/MA0602.1/Jaspar(0.794)
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motif file (matrix)
6 T A C G G A C T A C G T A G C T A C T G A G C T A G C T G A T C 1e-860-1.982e+0313.73%6.73%56.1bp (63.9bp)PB0071.1_Sox4_1/Jaspar(0.833)
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motif file (matrix)
7 C G A T A C T G C T A G T G A C G C T A T A C G C G T A A T G C C G A T A C T G A G T C A G T C 1e-565-1.303e+0310.23%5.22%53.4bp (61.3bp)Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.907)
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motif file (matrix)
8 T A G C G C T A T A C G T A C G T C A G G T C A T A C G A G C T 1e-435-1.002e+0331.00%23.31%56.1bp (63.7bp)ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer(0.806)
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motif file (matrix)
9 T G A C G C T A C T A G C A G T C G T A T A G C T A C G C A G T C A T G G T A C 1e-312-7.200e+029.09%5.41%54.0bp (66.0bp)HIF1A/MA1106.1/Jaspar(0.748)
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motif file (matrix)
10 C G A T G A T C T A G C G C T A A G C T A C G T G A T C T A C G C G T A A G C T A C G T G T A C 1e-255-5.880e+020.35%0.01%53.5bp (48.3bp)TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer(0.633)
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motif file (matrix)
11 A C G T A C T G A T G C G T A C G A T C C A T G T A C G T C G A C T A G C T A G 1e-207-4.769e+0218.54%14.16%56.5bp (60.1bp)AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer(0.773)
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motif file (matrix)
12 T C G A T C G A A C T G C G T A C G T A A G T C A C T G A G T C 1e-190-4.395e+0210.41%7.22%53.8bp (64.5bp)PB0094.1_Zfp128_1/Jaspar(0.736)
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motif file (matrix)
13 A T C G A T G C A C T G A T C G A G C T A T G C A G T C A T G C 1e-156-3.612e+0217.84%14.05%55.9bp (58.2bp)KLF15/MA1513.1/Jaspar(0.701)
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motif file (matrix)
14 T G C A A G C T A C T G C G T A A T C G A C G T A G T C C G T A A C G T G T C A 1e-153-3.536e+022.75%1.38%52.9bp (62.7bp)BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer(0.991)
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motif file (matrix)
15 T C A G A G T C A C G T A C T G A C T G A G T C A C G T A C G T 1e-152-3.508e+0214.81%11.38%56.8bp (64.2bp)NFIX/MA0671.1/Jaspar(0.743)
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motif file (matrix)
16 C G T A A C T G C G T A A C G T G T C A C G T A C G A T C G T A A C G T A G T C 1e-136-3.145e+021.68%0.71%53.1bp (58.6bp)GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer(0.906)
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motif file (matrix)
17 C G T A A T C G C T G A C T A G A C T G C G T A C G T A A C T G A C T G C G T A A C G T A G T C 1e-112-2.599e+020.16%0.01%47.5bp (23.7bp)ETV4/MA0764.2/Jaspar(0.657)
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motif file (matrix)
18 T G A C A C G T A T G C A T G C G T A C G T C A A C T G A C G T G C T A A T C G A C T G A C T G 1e-89-2.065e+020.17%0.01%53.5bp (40.6bp)ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer(0.731)
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motif file (matrix)
19 A C G T C G T A C G T A G T A C A G C T A C T G T A C G A C T G C G T A C T A G G T C A A G T C 1e-87-2.021e+020.13%0.01%50.1bp (3.3bp)PB0195.1_Zbtb3_2/Jaspar(0.622)
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motif file (matrix)
20 C G A T G C A T A C T G T C G A G A T C A C G T G C A T T C G A C T A G C T A G A T G C G T C A 1e-67-1.551e+020.13%0.01%53.2bp (50.4bp)Nr2e1/MA0676.1/Jaspar(0.617)
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motif file (matrix)
21 C T G A G A T C T G C A C T A G G C T A A G T C C G T A G A T C A T C G A C G T T A G C T C G A 1e-66-1.535e+020.10%0.00%49.1bp (60.2bp)Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer(0.688)
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motif file (matrix)
22 A T C G A C G T A T G C G A T C C T A G T C G A T A G C G A T C C T A G A T C G 1e-54-1.251e+022.99%2.06%55.6bp (60.6bp)HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer(0.600)
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motif file (matrix)
23 T C G A C G T A C G T A G T C A A T C G A G T C A C G T A G T C A C G T A G C T A C G T C G T A 1e-52-1.203e+020.08%0.00%51.6bp (48.7bp)POU6F2/MA0793.1/Jaspar(0.651)
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motif file (matrix)
24 T G A C A C T G A T G C G A C T A T G C A T C G A T G C A T C G A T G C A T C G 1e-43-1.007e+024.14%3.14%57.3bp (56.6bp)NRF1/MA0506.1/Jaspar(0.702)
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motif file (matrix)
25 A T G C A T C G A G T C A T C G T A C G T A G C A C T G A T G C 1e-36-8.461e+013.66%2.79%56.8bp (56.9bp)PB0113.1_E2F3_2/Jaspar(0.649)
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motif file (matrix)
26 * A G T C A G T C A G T C A G T C A G T C A G T C A G T C A G T C A G T C A G T C A G T C A G T C 1e-8-2.037e+012.74%2.38%57.2bp (51.4bp)PB0097.1_Zfp281_1/Jaspar(0.913)
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motif file (matrix)