Homer de novo Motif Results (test9//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
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More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 22475
Total background sequences = 26834
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C T A G G A C T T C G A T G C A C T G A A G T C C T G A C G T A 1e-1004-2.312e+0330.59%13.15%54.7bp (64.2bp)FOXA2/MA0047.3/Jaspar(0.944)
More Information | Similar Motifs Found
motif file (matrix)
2 G T C A C G T A G T A C G C T A A G T C C G A T T A G C C G A T C T A G A G C T C G T A G A T C 1e-553-1.274e+039.95%2.84%52.5bp (68.6bp)GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer(0.889)
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motif file (matrix)
3 G C A T T C G A A G C T C G A T C T A G C A T G T G C A C T G A A G T C C G T A A G T C G C T A 1e-251-5.800e+022.06%0.25%43.4bp (72.0bp)AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer(0.697)
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motif file (matrix)
4 C G A T A C G T A C G T A C G T C G T A A G C T C G A T A C T G 1e-191-4.413e+0215.56%9.34%55.3bp (60.7bp)HOXB13/MA0901.2/Jaspar(0.955)
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motif file (matrix)
5 T C A G G T A C G T C A T C G A T C A G A T G C T G C A T C A G 1e-152-3.510e+0242.30%33.84%55.1bp (62.8bp)Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer(0.743)
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motif file (matrix)
6 A C T G A T C G A C T G C G T A C G T A A C G T A C T G A C T G C G T A C G T A A C G T A C T G 1e-134-3.107e+020.62%0.03%45.7bp (17.6bp)TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer(0.737)
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motif file (matrix)
7 T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A 1e-121-2.809e+0231.79%24.82%56.1bp (63.5bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.831)
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motif file (matrix)
8 C T A G C G A T A G T C A C G T A C T G C G A T A C T G G T A C A G C T A C T G C G T A T A C G 1e-111-2.572e+020.32%0.01%56.7bp (17.7bp)MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer(0.637)
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motif file (matrix)
9 G A C T C G T A A T C G T A G C G A T C G A C T C T G A C T A G A T C G G C A T T C A G A G C T 1e-107-2.468e+021.24%0.23%45.4bp (87.0bp)Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer(0.584)
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motif file (matrix)
10 C G T A G C T A A C G T C G T A C G T A A G T C A C G T C G T A C G T A A C T G G C T A A C G T 1e-104-2.396e+020.44%0.02%61.8bp (34.2bp)HMBOX1/MA0895.1/Jaspar(0.706)
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motif file (matrix)
11 T C A G C G T A A C T G A G C T G A C T T A C G C G T A A C T G A C G T T C G A A T C G A G C T 1e-103-2.379e+020.40%0.01%43.7bp (39.9bp)NKX2-2/MA1645.1/Jaspar(0.666)
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motif file (matrix)
12 C T G A G C T A C G T A T A G C G C T A G T C A G A T C C G A T T C G A T A C G C G T A T A C G 1e-98-2.276e+020.56%0.04%37.4bp (50.0bp)PB0066.1_Sox17_1/Jaspar(0.665)
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motif file (matrix)
13 G C A T C T G A A G T C G C A T A C T G A G C T G T C A G A T C G T A C C A T G 1e-98-2.268e+023.10%1.25%52.1bp (75.7bp)ZBTB32/MA1580.1/Jaspar(0.907)
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motif file (matrix)
14 A C G T A G T C G C T A A G C T C G T A C A T G G A T C T G C A A C G T C T A G A C G T A C G T 1e-96-2.218e+020.29%0.01%59.1bp (2.4bp)GRHL2/MA1105.2/Jaspar(0.607)
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motif file (matrix)
15 A G T C A G C T A G T C A C G T C A G T A C G T A C T G A G T C T C G A C T A G C G A T A C G T 1e-88-2.036e+020.32%0.01%35.0bp (76.4bp)Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer(0.629)
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motif file (matrix)
16 A G T C C G T A T C A G C G T A G T C A A C T G A C T G A G T C C G T A G T C A A C T G C G T A 1e-78-1.800e+020.53%0.05%50.8bp (55.5bp)SD0002.1_at_AC_acceptor/Jaspar(0.717)
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motif file (matrix)
17 A C T G A G C T A C G T A C G T A C G T C G T A A G T C C G T A A T G C A G T C T C A G C G T A 1e-75-1.748e+020.24%0.01%48.5bp (0.0bp)TBX2/MA0688.1/Jaspar(0.666)
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motif file (matrix)
18 T A C G A C T G C G T A G C T A A T G C C A T G A G T C T A G C A C G T T G A C 1e-67-1.547e+020.44%0.04%43.4bp (36.1bp)REL/MA0101.1/Jaspar(0.675)
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motif file (matrix)
19 A C G T A C T G A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T C G T A A C T G 1e-66-1.541e+020.56%0.07%35.6bp (41.8bp)ONECUT2/MA0756.1/Jaspar(0.699)
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motif file (matrix)
20 C T G A T A C G G T C A C G A T C G T A C T G A A T C G C G T A C T A G T C G A T G C A G C T A 1e-62-1.430e+020.32%0.02%56.2bp (66.8bp)GATA6/MA1104.2/Jaspar(0.771)
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motif file (matrix)
21 C G A T C G T A A C T G A G T C C T A G T A C G C T G A C G T A A C T G A C T G 1e-60-1.400e+020.59%0.09%48.7bp (53.0bp)MF0001.1_ETS_class/Jaspar(0.688)
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motif file (matrix)
22 A G T C A G T C C G A T A G T C A G T C A G T C A C G T A C G T A C G T A C T G C G A T A G C T 1e-56-1.296e+020.26%0.01%29.9bp (28.8bp)SOX4/MA0867.2/Jaspar(0.766)
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motif file (matrix)
23 A C T G C T G A A G C T A T G C A C G T C G T A C G T A C A G T G T C A A C G T 1e-54-1.260e+020.76%0.17%43.4bp (58.3bp)PB0194.1_Zbtb12_2/Jaspar(0.630)
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motif file (matrix)
24 A C T G A C T G C G T A A T C G A C T G C G T A A C G T A C G T G T C A A C T G 1e-48-1.123e+020.28%0.02%49.6bp (39.4bp)Crx/MA0467.1/Jaspar(0.832)
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motif file (matrix)
25 C G T A A G T C C T G A A C G T A G T C C G T A A G T C C T G A C G T A A C G T 1e-45-1.055e+020.57%0.12%36.8bp (56.2bp)Sox17/MA0078.1/Jaspar(0.694)
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motif file (matrix)
26 A G T C A C T G C G T A A G T C C G T A A G T C A G T C A G T C 1e-21-4.938e+010.25%0.05%51.2bp (60.0bp)Klf1/MA0493.1/Jaspar(0.777)
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motif file (matrix)
27 T G A C T A C G T C G A G C T A A G C T A T G C A T C G T C G A 1e-17-3.931e+010.49%0.20%50.3bp (58.3bp)HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer(0.618)
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motif file (matrix)
28 A C G T A T C G A C G T T A C G A C G T C A G T C A T G C A G T C T A G A G C T C T A G A G C T 1e-16-3.710e+010.38%0.14%53.2bp (93.7bp)RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer(0.652)
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motif file (matrix)
29 * T A G C C T A G T A G C A T G C A C T G G T A C A T C G A C T G 1e-9-2.235e+010.20%0.06%52.7bp (31.1bp)HINFP/MA0131.2/Jaspar(0.729)
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motif file (matrix)
30 * A C T G A C T G A C T G A C T G A C T G A C T G A C T G A C T G A C T G A C T G 1e0-1.751e+007.74%7.57%53.5bp (53.6bp)PB0097.1_Zfp281_1/Jaspar(0.899)
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motif file (matrix)