Homer de novo Motif Results (Chond_hfd_open_motif/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 509
Total background sequences = 48344
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C T G A T G C A G T C G T A C A G C T T A G C A C G T C T G A T A C G A G C T A T C G A T C G 1e-23-5.523e+016.09%0.45%41.2bp (60.4bp)CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.857)
More Information | Similar Motifs Found		motif file (matrix)
2 A C G T T A G C C G T A T G C A G T C A G C T A C G A T A C G T A G C T A G T C A G T C C G T A 1e-17-3.948e+013.73%0.21%61.8bp (65.2bp)NFAT5/MA0606.1/Jaspar(0.787)
More Information | Similar Motifs Found		motif file (matrix)
3 A T G C A G T C A C G T A C T G A T G C A G T C C G T A C T G A 1e-16-3.894e+0127.50%13.22%52.4bp (67.3bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.909)
More Information | Similar Motifs Found		motif file (matrix)
4 T A G C C G T A C T A G C T G A C T A G A C T G A C G T A G C T G A C T A G T C G A T C G T C A 1e-15-3.456e+016.48%1.09%54.6bp (60.0bp)ZBTB18/MA0698.1/Jaspar(0.689)
More Information | Similar Motifs Found		motif file (matrix)
5 T G C A A C G T C A T G C G T A T A C G A C G T G A T C G T C A 1e-14-3.326e+0111.98%3.76%47.8bp (62.8bp)AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.973)
More Information | Similar Motifs Found		motif file (matrix)
6 C G A T C T A G A C T G G C T A T G C A G C A T A G C T A G C T C A T G T A C G 1e-13-3.166e+0111.79%3.79%55.0bp (62.3bp)PB0134.1_Hnf4a_2/Jaspar(0.705)
More Information | Similar Motifs Found		motif file (matrix)
7 T C G A A G C T C A G T C A T G A T C G A T G C G A C T A T G C A G T C G A T C C G T A A T C G 1e-12-2.824e+016.09%1.21%53.1bp (63.6bp)NFY(CCAAT)/Promoter/Homer(0.677)
More Information | Similar Motifs Found		motif file (matrix)
8 * G T A C A C G T A G T C C G T A A C G T C G T A A C T G A C G T A C G T C G T A C A G T A C G T 1e-11-2.758e+010.98%0.00%57.2bp (0.0bp)HMBOX1/MA0895.1/Jaspar(0.667)
More Information | Similar Motifs Found		motif file (matrix)
9 * C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C T G A C G T C G T A A C G T A C T G 1e-11-2.758e+010.98%0.00%17.1bp (44.8bp)Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer(0.684)
More Information | Similar Motifs Found		motif file (matrix)
10 * C G T A C T A G C G T A A C T G A G T C C G T A A C T G A G T C A G T C G T C A A C T G C G T A 1e-11-2.700e+011.96%0.06%52.7bp (65.5bp)ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer(0.633)
More Information | Similar Motifs Found		motif file (matrix)
11 * A C T G C A T G A T G C T G C A A C G T T C A G A C G T A G C T A C G T A G T C G A T C C G T A 1e-11-2.626e+013.93%0.50%48.7bp (62.1bp)NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer(0.720)
More Information | Similar Motifs Found		motif file (matrix)
12 * C G T A A G C T C G T A C G T A C T G A A G T C C G T A A C G T T C G A A C G T A C G T A C G T 1e-11-2.596e+011.38%0.02%58.4bp (64.3bp)FOXG1/MA0613.1/Jaspar(0.690)
More Information | Similar Motifs Found		motif file (matrix)
13 * A T C G A C G T A C G T A G T C A G T C C G A T T G C A A C G T A G C T C G A T C T A G T A G C 1e-10-2.473e+012.16%0.11%59.3bp (53.3bp)SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer(0.641)
More Information | Similar Motifs Found		motif file (matrix)
14 * A C G T A C G T A T G C C G T A A C T G A G T C C G T A A G T C C G T A A G T C C G T A C G T A 1e-10-2.376e+011.38%0.02%54.6bp (77.7bp)PB0208.1_Zscan4_2/Jaspar(0.776)
More Information | Similar Motifs Found		motif file (matrix)
15 * A T C G A C G T A G T C A C G T A G T C A G T C A C G T C T A G A C T G A C T G A C T G G T C A 1e-9-2.296e+011.77%0.07%40.0bp (51.5bp)EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer(0.747)
More Information | Similar Motifs Found		motif file (matrix)
16 * A C T G A C T G C G T A A C T G A G T C A T C G A C G T C T G A C G A T A C G T 1e-9-2.287e+011.96%0.10%51.5bp (52.9bp)POL013.1_MED-1/Jaspar(0.707)
More Information | Similar Motifs Found		motif file (matrix)
17 * G T A C C G A T A T C G A C T G C A T G A G T C A C G T A G T C A T C G A C T G 1e-9-2.223e+015.70%1.36%48.7bp (65.8bp)PB0099.1_Zfp691_1/Jaspar(0.633)
More Information | Similar Motifs Found		motif file (matrix)
18 * A G T C C T G A A C T G A T C G T A G C A G T C A C G T A C T G C A T G A T C G A C G T A G C T 1e-9-2.181e+013.34%0.45%47.5bp (56.5bp)ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(0.737)
More Information | Similar Motifs Found		motif file (matrix)
19 * G T C A C T G A T C A G A G C T A G T C A G C T A T C G C G A T T C A G A G T C 1e-9-2.135e+014.52%0.90%55.4bp (66.8bp)Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer(0.669)
More Information | Similar Motifs Found		motif file (matrix)
20 * C G T A G A C T A G C T G T A C G T C A A C G T C T G A A C T G C G T A G T C A 1e-9-2.105e+013.14%0.41%47.2bp (60.6bp)PB0170.1_Sox17_2/Jaspar(0.787)
More Information | Similar Motifs Found		motif file (matrix)
21 * A G C T A T G C A C G T A G C T A C G T C A T G G T A C A T C G A G T C C G A T A C T G C T A G 1e-9-2.090e+016.48%1.84%53.3bp (63.9bp)Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer(0.648)
More Information | Similar Motifs Found		motif file (matrix)
22 * C G T A A T C G A C T G C T A G G T C A C G T A T C G A C G T A A C T G A G T C G T C A C A G T 1e-9-2.080e+014.13%0.77%48.6bp (59.6bp)ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer(0.708)
More Information | Similar Motifs Found		motif file (matrix)
23 * C G T A C G T A C A T G G T C A C G T A C A T G A C G T G C T A A G C T A G C T 1e-8-1.960e+013.34%0.52%56.9bp (59.4bp)PROX1/MA0794.1/Jaspar(0.672)
More Information | Similar Motifs Found		motif file (matrix)
24 * A G T C A G C T T G C A A G T C A C G T A C T G A C T G A G T C A G T C C G T A 1e-8-1.925e+015.70%1.56%48.9bp (64.6bp)Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer(0.838)
More Information | Similar Motifs Found		motif file (matrix)
25 * G T C A T C G A A C G T C T A G C T G A C T G A C G T A A C T G T C G A T A G C 1e-8-1.925e+015.70%1.56%60.2bp (60.3bp)Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer(0.743)
More Information | Similar Motifs Found		motif file (matrix)
26 * C G T A C T A G C T A G C A T G C G T A A C T G T G A C G A T C T A G C A T G C 1e-7-1.717e+014.13%0.95%62.2bp (60.4bp)POL013.1_MED-1/Jaspar(0.735)
More Information | Similar Motifs Found		motif file (matrix)
27 * C A T G G A C T A C T G G T A C G A C T A G T C C G T A C A T G C T G A C G T A 1e-7-1.697e+015.11%1.43%43.2bp (64.5bp)PB0099.1_Zfp691_1/Jaspar(0.725)
More Information | Similar Motifs Found		motif file (matrix)
28 * A C G T A C T G A C G T A C T G A C T G C G T A C G T A A G T C A C G T A G T C C G T A A C T G 1e-6-1.501e+010.79%0.01%29.5bp (86.3bp)VDR/MA0693.2/Jaspar(0.589)
More Information | Similar Motifs Found		motif file (matrix)
29 * C G T A A C G T A C G T A T C G G T C A T G C A C A T G A C G T A G T C G C A T 1e-6-1.498e+012.75%0.49%62.6bp (59.3bp)Ddit3::Cebpa/MA0019.1/Jaspar(0.624)
More Information | Similar Motifs Found		motif file (matrix)
30 * C G A T A T G C T G A C C G T A A G T C C G T A T C G A C T G A 1e-5-1.189e+0110.61%5.60%55.9bp (63.5bp)RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer(0.820)
More Information | Similar Motifs Found		motif file (matrix)
31 * A T C G G C T A C T A G A C T G C T A G G A T C G T A C G A T C C G T A C T A G T A G C C T G A 1e-5-1.177e+012.16%0.39%52.7bp (62.8bp)ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer(0.612)
More Information | Similar Motifs Found		motif file (matrix)
32 * A C T G C G T A A C G T C G T A A C T G A C G T A C T G C G T A A C T G C G T A 1e-2-4.763e+000.39%0.03%52.5bp (38.0bp)PRDM1/MA0508.2/Jaspar(0.668)
More Information | Similar Motifs Found		motif file (matrix)
33 * C G T A A C T G A G T C C G T A A C T G A C G T A C T G C G T A A C G T C G T A A C T G A C G T 1e-1-4.559e+000.20%0.00%52.7bp (0.0bp)Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer(0.675)
More Information | Similar Motifs Found		motif file (matrix)