Homer de novo Motif Results (output_directory//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
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More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 543
Total background sequences = 43000
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C A G T C T G A T C A G T A C G G A C T A G T C C T G A A G C T G C T A C A T G G A T C A G T C 1e-1187-2.734e+0353.59%0.00%29.7bp (36.0bp)RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer(0.674)
More Information | Similar Motifs Found
motif file (matrix)
2 A G C T A C G T G T A C A C G T A G T C C G T A C T A G A G T C C G T A A C G T A G C T A G T C 1e-1084-2.498e+0349.54%0.00%23.4bp (24.7bp)MAFG/MA0659.2/Jaspar(0.666)
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motif file (matrix)
3 A C G T A C G T C T G A G A C T C T G A G T A C A C G T C T A G T C A G A C G T A G T C G T A C 1e-1029-2.371e+0347.33%0.00%36.4bp (30.7bp)PB0079.1_Sry_1/Jaspar(0.591)
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motif file (matrix)
4 C G T A C G T A A G C T A C T G A G C T T C A G C G T A A C T G C T A G G A C T A G T C A G T C 1e-990-2.282e+0348.99%0.01%45.7bp (0.0bp)GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer(0.604)
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motif file (matrix)
5 A G C T A C T G A G C T A C G T G T A C A G T C A C G T G T A C A G C T A C G T A T G C A G T C 1e-911-2.098e+0342.54%0.00%32.3bp (25.1bp)PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer(0.703)
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motif file (matrix)
6 A C T G A C G T C T A G A G C T A C G T A G C T A C G T A C G T C T G A A G T C A G T C A C G T 1e-878-2.024e+0347.51%0.01%30.7bp (62.8bp)Foxj3/MA0851.1/Jaspar(0.645)
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motif file (matrix)
7 C G T A A C T G A C G T A C G T A C T G A G T C A C G T C G T A A C T G A G T C 1e-874-2.013e+0345.86%0.01%25.6bp (21.8bp)Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer(0.723)
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motif file (matrix)
8 A C G T A C G T A C G T A C T G A C G T A C G T A G T C A G C T A G T C A G T C A C G T G T A C 1e-784-1.806e+0347.33%0.02%19.5bp (51.0bp)PB0071.1_Sox4_1/Jaspar(0.733)
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motif file (matrix)
9 A G T C C T A G A G C T A G C T A G T C G A T C C G T A C A T G G A T C A G T C C T G A G T C A 1e-752-1.733e+0341.62%0.01%47.7bp (57.6bp)E2F8/MA0865.1/Jaspar(0.718)
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motif file (matrix)
10 G A T C G T A C A C G T G C A T G A T C A G T C A G C T C G A T G C T A C A T G A C G T C G A T 1e-748-1.724e+0366.11%0.32%34.5bp (90.4bp)ETV4/MA0764.2/Jaspar(0.736)
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motif file (matrix)
11 A C T G A C T G C T G A A G T C C T G A C G T A C G T A A C G T C T G A A G T C T C G A A C T G 1e-713-1.642e+0336.83%0.01%30.1bp (9.9bp)Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer(0.582)
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motif file (matrix)
12 C T A G A G T C A G T C G A C T A C G T A G C T C A T G A G T C A G T C A G C T A G T C G C A T 1e-709-1.634e+0355.80%0.14%21.1bp (83.4bp)Sox3/MA0514.1/Jaspar(0.633)
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motif file (matrix)
13 C G T A A G T C T C G A C T G A C T A G A C G T A C G T C T G A G A T C G A C T A C G T A G T C 1e-702-1.619e+0353.04%0.10%22.7bp (94.7bp)ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer(0.664)
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motif file (matrix)
14 A C G T A C G T A G T C A G T C C T G A A G T C C G T A C G T A A C T G A C G T 1e-693-1.596e+0347.51%0.05%20.0bp (63.9bp)CEBPD/MA0836.2/Jaspar(0.719)
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motif file (matrix)
15 C A T G A G C T A G T C G A T C G C T A C T G A C T A G G T A C C G T A C G T A C T A G A G T C 1e-683-1.574e+0354.70%0.15%42.9bp (72.1bp)p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer(0.632)
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motif file (matrix)
16 A C G T C G A T C T G A C G T A C G T A C G T A T C G A A C T G A C G T A C G T A G T C A C G T 1e-666-1.535e+0344.75%0.04%17.9bp (56.6bp)NR1I3/MA1534.1/Jaspar(0.647)
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motif file (matrix)
17 A C T G A G T C C G T A C G T A A C T G A G T C C T G A A C G T A C G T C G T A 1e-642-1.480e+0344.94%0.05%38.4bp (95.6bp)Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer(0.679)
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motif file (matrix)
18 A C G T C G T A A G T C A C G T A C G T A G T C A T G C A C G T A G T C A G T C 1e-555-1.279e+0343.09%0.09%19.6bp (68.1bp)PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.792)
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motif file (matrix)
19 A C T G A C G T A C G T A G T C A C G T C G T A C G T A A C T G 1e-478-1.102e+0354.51%0.70%27.1bp (81.9bp)PB0194.1_Zbtb12_2/Jaspar(0.857)
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motif file (matrix)
20 A C G T A C G T C G T A A C G T A C G T A G C T A C T G C T G A C G T A A C T G 1e-334-7.714e+0234.44%0.26%32.1bp (75.5bp)LIN54/MA0619.1/Jaspar(0.674)
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motif file (matrix)
21 A C G T C G T A A G T C C G T A A C T G C G T A C G T A A C G T 1e-317-7.310e+0244.75%1.09%48.9bp (73.6bp)ZBTB32/MA1580.1/Jaspar(0.715)
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motif file (matrix)
22 A G T C A G T C C G T A C G T A A C G T A G T C A C T G A C T G 1e-302-6.954e+0221.73%0.03%48.2bp (63.8bp)NFY(CCAAT)/Promoter/Homer(0.869)
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motif file (matrix)
23 A G T C C T A G A C G T A G T C C G T A A C T G T A C G A C G T A C G T C T G A C G A T C G T A 1e-183-4.230e+0213.08%0.01%49.9bp (36.0bp)SIX1/MA1118.1/Jaspar(0.716)
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motif file (matrix)
24 C G T A C G T A G T A C A G T C C A T G A C T G C G T A A G T C C T G A A T G C 1e-167-3.852e+0217.31%0.12%49.8bp (75.9bp)Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer(0.709)
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motif file (matrix)
25 C G T A A C T G A G T C C G T A A C T G A C G T C G T A A T C G A C T G A C T G 1e-140-3.240e+0211.60%0.03%45.3bp (76.7bp)ZKSCAN1/MA1585.1/Jaspar(0.689)
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motif file (matrix)
26 A C T G C T A G A C G T C G T A C G T A C G T A A C T G A C G T A C T G A C G T C G T A C G T A 1e-86-1.989e+025.34%0.00%16.8bp (0.0bp)Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer(0.627)
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motif file (matrix)
27 C G T A C G T A A C G T C G T A A C G T A G T C A C G T A C T G A G T C A C G T C G T A A C T G 1e-75-1.738e+025.52%0.01%43.0bp (0.0bp)Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer(0.632)
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motif file (matrix)
28 A C G T A C G T A C G T G T C A A T C G A T C G T A G C A C G T C G T A T C G A G T C A A G C T 1e-69-1.603e+025.89%0.02%45.2bp (44.1bp)BARHL2/MA0635.1/Jaspar(0.567)
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motif file (matrix)
29 A G T C A G T C A C G T A C T G A C T G A G T C C G T A A C G T 1e-61-1.421e+0214.00%0.94%46.3bp (78.0bp)HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer(0.768)
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motif file (matrix)
30 A G T C A C G T A C G T A G C T A G T C A C G T A C T G A G T C C G T A A C T G C T G A C G T A 1e-60-1.404e+025.71%0.03%35.9bp (43.3bp)STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer(0.699)
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motif file (matrix)
31 A C T G A G C T A C T G A C G T C T A G A G T C A C G T A G T C 1e-49-1.132e+0211.23%0.76%43.7bp (76.6bp)PB0130.1_Gm397_2/Jaspar(0.676)
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motif file (matrix)