Homer de novo Motif Results (T2B_down_motif/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 5580
Total background sequences = 43494
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C T G A T C G A A G T C G T A C G C A T C T A G G A C T G T C A C G T A A C G T A G C T C G T A 1e-513-1.182e+0322.54%4.27%50.4bp (65.9bp)VAX1/MA0722.1/Jaspar(0.911)
More Information | Similar Motifs Found
motif file (matrix)
2 T C G A C A G T A C T G C T G A A T G C C A G T G T A C G C T A A G C T A C G T 1e-175-4.034e+0216.06%5.55%55.3bp (63.3bp)Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer(0.970)
More Information | Similar Motifs Found
motif file (matrix)
3 G C A T A T G C A T G C A G C T A C G T C T A G A T C G T A G C C G T A T C G A 1e-106-2.445e+0244.09%30.14%53.8bp (66.3bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.965)
More Information | Similar Motifs Found
motif file (matrix)
4 T G C A A C G T C T A G C G T A G T C A C G A T T C A G T C A G 1e-94-2.184e+0225.52%14.85%54.4bp (62.7bp)PB0178.1_Sox8_2/Jaspar(0.868)
More Information | Similar Motifs Found
motif file (matrix)
5 A G C T C A T G C G T A G A C T C A T G G T A C C T G A C G T A A G T C T G C A 1e-80-1.856e+028.57%3.18%52.8bp (65.4bp)Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer(0.970)
More Information | Similar Motifs Found
motif file (matrix)
6 T G C A T C G A C T G A A T C G G T C A A C T G A G T C A G T C 1e-80-1.843e+0253.19%40.56%55.5bp (64.3bp)PB0203.1_Zfp691_2/Jaspar(0.716)
More Information | Similar Motifs Found
motif file (matrix)
7 G C A T A C T G C T A G G T A C C A T G A G T C G T A C C G T A T A C G A T C G 1e-77-1.786e+0211.09%4.86%55.3bp (65.1bp)PB0113.1_E2F3_2/Jaspar(0.866)
More Information | Similar Motifs Found
motif file (matrix)
8 G T A C T C G A T G A C C G T A T A G C G C T A A T C G C G A T A T C G A G C T 1e-62-1.436e+0224.86%16.10%56.0bp (63.4bp)ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer(0.711)
More Information | Similar Motifs Found
motif file (matrix)
9 C G T A C G T A C G T A A G T C A G T C C T G A A G T C C G T A 1e-50-1.159e+0214.87%8.70%54.7bp (62.8bp)RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer(0.972)
More Information | Similar Motifs Found
motif file (matrix)
10 C G T A C T A G A C G T G T A C T G C A T C G A A G T C G T C A 1e-43-1.013e+0219.55%12.87%55.3bp (64.3bp)Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer(0.853)
More Information | Similar Motifs Found
motif file (matrix)
11 C G T A T C G A T G A C G A T C T C G A A T G C C G A T G T C A C G T A G A C T 1e-34-7.859e+011.22%0.17%42.8bp (58.3bp)HOXA5/MA0158.1/Jaspar(0.695)
More Information | Similar Motifs Found
motif file (matrix)
12 C G T A C T A G A C T G A G T C A T G C A C G T A T G C A G T C 1e-32-7.500e+0118.17%12.56%56.2bp (66.7bp)ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(0.935)
More Information | Similar Motifs Found
motif file (matrix)
13 A T G C G A T C G A T C C G A T C A T G C A T G C A T G C T G A C T G A T C G A 1e-31-7.229e+0116.34%11.10%55.1bp (61.2bp)EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer(0.852)
More Information | Similar Motifs Found
motif file (matrix)
14 C T A G G T A C G A T C T G A C G T A C C G T A T A G C G T A C G A T C C G T A C A T G A T G C 1e-24-5.752e+016.83%3.86%55.6bp (64.6bp)Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer(0.847)
More Information | Similar Motifs Found
motif file (matrix)
15 C T A G A T C G T G C A T C G A A C G T A C G T C A G T C A T G T C A G A T G C G T A C G T C A 1e-21-4.842e+015.05%2.73%52.6bp (63.9bp)Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer(0.675)
More Information | Similar Motifs Found
motif file (matrix)
16 C T A G A G T C A G T C C G T A C T G A A C T G T G A C A T G C C G T A C G T A G C T A A G T C 1e-14-3.344e+010.39%0.04%55.9bp (37.9bp)NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer(0.762)
More Information | Similar Motifs Found
motif file (matrix)
17 A G T C G C T A A C T G T A C G T A C G G C A T G T C A G T C A C A G T G C A T G T C A C A G T 1e-13-3.182e+010.22%0.01%58.2bp (0.0bp)PH0022.1_Dlx3/Jaspar(0.642)
More Information | Similar Motifs Found
motif file (matrix)
18 * C G T A A C T G A C G T C G T A C G T A C T G A A C G T A G T C 1e-11-2.673e+012.94%1.63%53.2bp (67.3bp)Hoxc9/MA0485.1/Jaspar(0.752)
More Information | Similar Motifs Found
motif file (matrix)
19 * A C T G A C G T A C G T C G T A A G T C A G T C C T G A A G T C A C G T A C T G 1e-7-1.838e+010.23%0.03%58.9bp (66.6bp)PB0109.1_Bbx_2/Jaspar(0.673)
More Information | Similar Motifs Found
motif file (matrix)
20 * C G T A A G T C C G T A A G T C A C G T G T C A A C T G A C G T A G T C G C A T 1e-5-1.379e+010.30%0.07%48.3bp (62.9bp)Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer(0.587)
More Information | Similar Motifs Found
motif file (matrix)
21 * C G T A C T A G A T G C A C G T A T C G C T G A A C T G A T G C A C G T A T C G C T G A A C T G 1e-4-9.989e+000.88%0.47%50.2bp (65.0bp)SREBF1/MA0595.1/Jaspar(0.623)
More Information | Similar Motifs Found
motif file (matrix)
22 * A G T C T C G A A C G T C T G A G T A C A T G C C G T A A G T C A T C G G T A C 1e-2-5.464e+000.07%0.01%41.7bp (34.3bp)Ahr::Arnt/MA0006.1/Jaspar(0.701)
More Information | Similar Motifs Found
motif file (matrix)