Homer de novo Motif Results (LnCaP_res_vs_unt_unt_motif/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 296
Total background sequences = 45778
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C T G C G T A C A G T C G A T A T G C A G T C C G T A G A C T A C G T A G T C C T A G C T G A 1e-87-2.021e+029.12%0.00%55.0bp (0.0bp)Ddit3::Cebpa/MA0019.1/Jaspar(0.596)
More Information | Similar Motifs Found
motif file (matrix)
2 A G C T A C T G C G T A A G C T A C T G C G T A A C G T A C G T A T G C G A T C 1e-48-1.116e+029.80%0.09%65.1bp (83.3bp)PH0037.1_Hdx/Jaspar(0.738)
More Information | Similar Motifs Found
motif file (matrix)
3 G T C A G A T C C G T A A C T G C G T A A C T G A C G T A G C T C A T G C G T A G T C A A G T C 1e-39-8.991e+016.76%0.03%53.5bp (66.4bp)ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer(0.583)
More Information | Similar Motifs Found
motif file (matrix)
4 C T G A C G A T A G T C A C G T A C T G A T G C C G T A C G T A A C T G A C G T A C T G A C T G 1e-38-8.939e+015.74%0.01%55.4bp (70.2bp)PH0111.1_Nkx2-2/Jaspar(0.674)
More Information | Similar Motifs Found
motif file (matrix)
5 A C G T A C G T A T G C A C T G C G T A C G T A C G T A A G T C A C T G A C T G A C T G C G A T 1e-35-8.081e+014.05%0.00%62.4bp (0.0bp)PB0034.1_Irf4_1/Jaspar(0.632)
More Information | Similar Motifs Found
motif file (matrix)
6 A G T C G C A T C G T A T A C G C G T A A T G C C G T A A C T G C G T A C G T A A C T G G T A C 1e-31-7.206e+016.42%0.06%52.1bp (60.8bp)Smad4/MA1153.1/Jaspar(0.719)
More Information | Similar Motifs Found
motif file (matrix)
7 A C G T C G A T A C G T A T C G C G T A C G T A C G T A G T A C C G T A A G T C A C G T A T G C 1e-28-6.649e+016.42%0.09%45.9bp (68.3bp)CHR(?)/Hela-CellCycle-Expression/Homer(0.693)
More Information | Similar Motifs Found
motif file (matrix)
8 G T C A A C G T A C G T A T G C C G A T T G A C C G T A A C T G C G T A C G T A C G T A A G T C 1e-26-6.108e+015.74%0.07%56.5bp (68.3bp)STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer(0.801)
More Information | Similar Motifs Found
motif file (matrix)
9 G C A T G T A C A C G T A G C T A G C T A C T G A C G T A C T G C G T A A C G T A C T G C G A T 1e-19-4.485e+014.39%0.06%63.3bp (70.2bp)SOX10/MA0442.2/Jaspar(0.669)
More Information | Similar Motifs Found
motif file (matrix)
10 C A G T G A T C G C A T C A G T G A T C C T A G G A C T C T G A C A G T G T C A C T G A C G T A 1e-18-4.173e+0112.84%2.08%56.5bp (61.2bp)POL012.1_TATA-Box/Jaspar(0.608)
More Information | Similar Motifs Found
motif file (matrix)
11 G A T C C G T A A C G T G C A T G A T C T A C G C G T A C G A T T C A G T G C A 1e-18-4.154e+0113.51%2.34%60.5bp (74.9bp)PB0005.1_Bbx_1/Jaspar(0.665)
More Information | Similar Motifs Found
motif file (matrix)
12 A G C T C A G T T A C G T C G A C G A T G C T A A T C G C G T A A C T G A G T C G T C A A C T G 1e-15-3.493e+017.09%0.62%42.4bp (67.7bp)ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer(0.643)
More Information | Similar Motifs Found
motif file (matrix)
13 G A C T C G A T G A C T G C A T G C T A C T A G C G A T C T G A T C A G C T G A 1e-14-3.262e+0123.65%8.62%52.1bp (53.2bp)Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer(0.712)
More Information | Similar Motifs Found
motif file (matrix)
14 A G T C A C T G A G T C A C G T A C G T A C G T A T C G C T G A A C T G A C T G A G T C A G T C 1e-12-2.943e+012.36%0.02%66.3bp (83.3bp)Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer(0.642)
More Information | Similar Motifs Found
motif file (matrix)
15 C T G A T C A G C G T A A T C G G T A C C G T A A C T G A G C T A G C T A C G T 1e-12-2.887e+018.45%1.30%58.7bp (65.4bp)GRHL2/MA1105.1/Jaspar(0.696)
More Information | Similar Motifs Found
motif file (matrix)
16 * A C T G A C T G C G T A C G A T C G T A A C G T C G T A A C G T A G T C A C G T 1e-11-2.675e+013.72%0.16%58.6bp (60.5bp)PB0163.1_Six6_2/Jaspar(0.739)
More Information | Similar Motifs Found
motif file (matrix)
17 * A C T G A C G T C T A G C T A G C G T A C G T A C T G A C G T A T A C G A C T G C G T A C G T A 1e-11-2.584e+013.04%0.08%61.4bp (62.3bp)NFATC2/MA0152.1/Jaspar(0.745)
More Information | Similar Motifs Found
motif file (matrix)
18 * A T G C G A C T A G T C G T A C G C A T C T A G C T A G T A C G G A T C A G C T A G T C G C T A 1e-10-2.354e+0128.38%13.86%59.1bp (66.2bp)ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer(0.610)
More Information | Similar Motifs Found
motif file (matrix)
19 * T C G A A G T C A G T C G T C A T C A G C T A G A T G C A C G T A C T G C T A G A C G T A T G C 1e-8-1.947e+0114.86%5.56%55.5bp (67.6bp)GLI2/MA0734.1/Jaspar(0.687)
More Information | Similar Motifs Found
motif file (matrix)
20 * C G T A A C G T C T G A A G C T A C G T A C G T A T C G A T G C 1e-7-1.658e+018.11%2.20%60.3bp (65.4bp)Arid5a/MA0602.1/Jaspar(0.695)
More Information | Similar Motifs Found
motif file (matrix)
21 * A C G T C T G A C G T A C G T A G A T C A T G C A G T C A C T G 1e-7-1.633e+013.72%0.42%50.1bp (68.0bp)Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer(0.773)
More Information | Similar Motifs Found
motif file (matrix)
22 * C T A G A C G T A T C G A C G T C T A G C T A G C G A T T A G C 1e-5-1.358e+0114.19%6.40%56.6bp (62.9bp)GLI2/MA0734.1/Jaspar(0.846)
More Information | Similar Motifs Found
motif file (matrix)
23 * G T C A G T A C C T G A A T G C C G T A A G C T T C G A G A C T G T C A A C G T C G T A G C A T 1e-5-1.227e+014.05%0.78%32.4bp (57.6bp)PB0080.1_Tbp_1/Jaspar(0.688)
More Information | Similar Motifs Found
motif file (matrix)
24 * A G C T G T C A T A G C C T G A T A C G A C G T A T G C A G T C C G T A G A T C 1e-3-8.354e+001.69%0.18%61.5bp (63.4bp)PB0134.1_Hnf4a_2/Jaspar(0.724)
More Information | Similar Motifs Found
motif file (matrix)
25 * A G T C A G T C A C G T A C G T A G C T A G T C A C G T C G A T 1e-2-6.211e+0017.91%12.01%52.8bp (67.0bp)PB0137.1_Irf3_2/Jaspar(0.763)
More Information | Similar Motifs Found
motif file (matrix)