Homer de novo Motif Results (output_folder/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 543
Total background sequences = 43200
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C G T A G C T A A G C T C T A G A C G T T C A G C G T A C T A G C T A G G A C T A G T C A G T C 1e-1157-2.665e+0360.04%0.01%44.1bp (48.1bp)GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer(0.604)
More Information | Similar Motifs Found		motif file (matrix)
2 A C G T A G C T A G T C A G T C C T G A G T A C T C G A C T G A C T A G A C G T A C G T G C T A 1e-1061-2.444e+0348.62%0.00%18.8bp (47.7bp)CEBPD/MA0836.2/Jaspar(0.661)
More Information | Similar Motifs Found		motif file (matrix)
3 A C G T A C G T A T G C A G C T C G T A G T C A C T A G A C G T A G C T C T A G A G T C A G C T 1e-1047-2.413e+0348.07%0.00%26.0bp (20.3bp)RFX7/MA1554.1/Jaspar(0.623)
More Information | Similar Motifs Found		motif file (matrix)
4 A C T G A C G T A G C T A C T G A G T C A C G T C G T A A C T G A G T C A G T C 1e-983-2.265e+0345.49%0.00%24.8bp (42.9bp)PB0056.1_Rfxdc2_1/Jaspar(0.751)
More Information | Similar Motifs Found		motif file (matrix)
5 C A G T A G T C C G T A G A C T T C G A A C T G G A T C T A G C A C G T C T A G A G C T A C G T 1e-983-2.265e+0345.49%0.00%30.4bp (31.2bp)GRHL2/MA1105.2/Jaspar(0.675)
More Information | Similar Motifs Found		motif file (matrix)
6 C G T A T C G A C T A G A G T C C G T A C G T A A C T G A G T C T C G A A C G T A C G T T C G A 1e-960-2.213e+0344.57%0.00%37.6bp (37.4bp)Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer(0.619)
More Information | Similar Motifs Found		motif file (matrix)
7 A C G T A T G C A G C T G T A C C G T A C T A G A G T C C G T A A C G T A C G T A T G C G T A C 1e-939-2.163e+0346.78%0.01%32.5bp (12.0bp)ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer(0.680)
More Information | Similar Motifs Found		motif file (matrix)
8 A G C T A G T C A G T C A C G T A C G T A G C T A C T G A C G T A C G T A G T C A C G T A G T C 1e-914-2.107e+0347.70%0.01%19.2bp (37.8bp)PB0061.1_Sox11_1/Jaspar(0.856)
More Information | Similar Motifs Found		motif file (matrix)
9 A G T C A C G T G T A C A C G T A C G T A G T C A G T C A C G T A C G T C G T A A C G T A C G T 1e-913-2.104e+0345.67%0.01%31.8bp (26.7bp)EHF/MA0598.3/Jaspar(0.683)
More Information | Similar Motifs Found		motif file (matrix)
10 C T A G A G C T T C A G A G C T A C G T A G C T A C G T A G C T C T G A A G T C A G T C A C G T 1e-894-2.060e+0352.85%0.02%30.5bp (35.9bp)Foxj3/MA0851.1/Jaspar(0.646)
More Information | Similar Motifs Found		motif file (matrix)
11 A G T C A G T C C T G A C T G A A G C T G A T C T C A G C T A G C T A G G C T A A G T C C G T A 1e-890-2.051e+0348.07%0.01%27.7bp (17.4bp)NFY(CCAAT)/Promoter/Homer(0.720)
More Information | Similar Motifs Found		motif file (matrix)
12 C G T A A C T G A C G T A C G T C T A G A G T C A C G T A G T C A G T C A G T C A C G T A G T C 1e-888-2.045e+0344.57%0.01%20.9bp (26.6bp)ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer(0.676)
More Information | Similar Motifs Found		motif file (matrix)
13 A C G T A C G T G T C A G A C T C T G A A G T C A C G T C T A G T C A G A G C T A G T C G T A C 1e-841-1.937e+0350.83%0.03%36.6bp (104.0bp)PB0079.1_Sry_1/Jaspar(0.594)
More Information | Similar Motifs Found		motif file (matrix)
14 A G T C A T G C A C G T A C G T A G C T A C T G A G T C A G T C A G C T A G T C A C G T A C G T 1e-804-1.853e+0346.96%0.02%18.9bp (89.7bp)PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer(0.643)
More Information | Similar Motifs Found		motif file (matrix)
15 A C T G A C G T A G T C A T G C C G T A G T C A A C T G A G T C C G T A C G T A 1e-688-1.584e+0343.46%0.03%32.1bp (65.6bp)Stat5a/MA1624.1/Jaspar(0.661)
More Information | Similar Motifs Found		motif file (matrix)
16 T C A G A G C T G C A T G T A C A G T C G C T A T C A G A G T C A G T C T G C A C T G A G C A T 1e-677-1.561e+0336.83%0.01%48.0bp (31.8bp)POL004.1_CCAAT-box/Jaspar(0.723)
More Information | Similar Motifs Found		motif file (matrix)
17 C G T A C G T A G T C A A C T G A C G T A C G T A G T C A C G T C G T A C G T A 1e-586-1.352e+0348.99%0.15%24.8bp (74.3bp)PB0194.1_Zbtb12_2/Jaspar(0.825)
More Information | Similar Motifs Found		motif file (matrix)
18 A C G T C G T A A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G T C 1e-577-1.329e+0346.59%0.12%19.6bp (67.4bp)PRDM1/MA0508.3/Jaspar(0.798)
More Information | Similar Motifs Found		motif file (matrix)
19 A C T G A C G T A C G T A G T C A G T C A C G T A G T C A C G T 1e-391-9.006e+0251.20%1.04%30.8bp (80.5bp)IKZF1/MA1508.1/Jaspar(0.733)
More Information | Similar Motifs Found		motif file (matrix)
20 C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C 1e-363-8.376e+0248.43%1.01%34.4bp (74.2bp)PB0172.1_Sox1_2/Jaspar(0.678)
More Information | Similar Motifs Found		motif file (matrix)
21 G T C A C G T A A G T C A T G C C A T G A C T G C G T A A G T C 1e-240-5.528e+0238.12%1.26%47.3bp (73.1bp)SIX1/MA1118.1/Jaspar(0.728)
More Information | Similar Motifs Found		motif file (matrix)
22 A G T C A G T C A C T G A C G T A C G T A G T C A G T C C G T A 1e-237-5.460e+0222.10%0.10%34.3bp (95.5bp)ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer(0.844)
More Information | Similar Motifs Found		motif file (matrix)
23 G A T C T C A G G C A T G A T C G C T A T C A G C A T G C A G T G A C T G T C A G C A T C G T A 1e-231-5.340e+0215.10%0.01%53.7bp (29.7bp)THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer(0.696)
More Information | Similar Motifs Found		motif file (matrix)
24 A C T G A G T C A G T C A G T C A C G T C T A G C T A G A G T C C T G A A C G T T A C G G T A C 1e-174-4.007e+0213.26%0.02%52.2bp (94.4bp)p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer(0.798)
More Information | Similar Motifs Found		motif file (matrix)
25 A C G T A C G T A C G T C G T A C G T A C G T A C G T A T C G A 1e-168-3.885e+0262.25%11.91%33.9bp (78.2bp)LIN54/MA0619.1/Jaspar(0.789)
More Information | Similar Motifs Found		motif file (matrix)
26 A G T C C G T A A T C G A G C T C T G A T A C G A C T G C A T G G A C T C T G A C T A G G T C A 1e-167-3.857e+0215.65%0.07%43.6bp (41.8bp)ZKSCAN1/MA1585.1/Jaspar(0.646)
More Information | Similar Motifs Found		motif file (matrix)
27 A G T C A C G T A C G T A G C T G T A C A C G T A C T G A G T C C G T A A C T G C T A G C G T A 1e-64-1.489e+025.89%0.02%39.1bp (72.6bp)ZBTB26/MA1579.1/Jaspar(0.702)
More Information | Similar Motifs Found		motif file (matrix)
28 A G T C A G T C A C G T C G T A C G T A C G T A A C G T C G T A 1e-55-1.285e+0215.47%1.51%42.9bp (74.3bp)Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer(0.832)
More Information | Similar Motifs Found		motif file (matrix)