Homer de novo Motif Results (homer_output//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 521
Total background sequences = 365
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C G T A C G T A C A T G A G C T A C G T C T A G A G T C A C G T C T G A A C T G A G T C G A T C 1e-48-1.107e+0246.45%4.57%74.2bp (3698194.5bp)HSFC1/MA1667.1/Jaspar(0.664)
More Information | Similar Motifs Found
motif file (matrix)
2 T G A C C A T G A C T G C G A T C A G T G A T C A G T C A G C T T G A C G C A T G C A T A G T C 1e-44-1.022e+0263.15%16.86%105.3bp (3297750.2bp)IKZF1/MA1508.1/Jaspar(0.718)
More Information | Similar Motifs Found
motif file (matrix)
3 C G A T T G A C A T G C C G T A A T G C C G T A C G T A A C T G A C G T A C G T C G T A A G T C 1e-43-9.942e+0145.11%5.25%41.2bp (3483168.2bp)ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer(0.674)
More Information | Similar Motifs Found
motif file (matrix)
4 G A T C A C G T A G C T G T C A A G C T C T G A A G T C A C G T C T A G T C A G A G C T A G T C 1e-42-9.713e+0140.50%3.47%31.0bp (3148275.7bp)Tb_0219(RRM)/Trypanosoma_brucei-RNCMPT00219-PBM/HughesRNA(0.710)
More Information | Similar Motifs Found
motif file (matrix)
5 A G T C A C G T A C G T A G C T A T G C A G C T A C T G A G T C T C G A C T A G C T G A C G T A 1e-37-8.654e+0158.73%16.54%116.2bp (3222652.7bp)STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer(0.693)
More Information | Similar Motifs Found
motif file (matrix)
6 A G T C T C G A A C G T A G C T C G T A C T A G C T A G A C G T A G T C C G T A A G C T C G T A 1e-36-8.433e+0163.72%21.37%108.0bp (3533870.6bp)ATF2/MA1632.1/Jaspar(0.715)
More Information | Similar Motifs Found
motif file (matrix)
7 A C G T A C G T A C G T C G T A C T A G T A G C A G T C A C G T C T G A C T G A C T G A A C G T 1e-32-7.576e+0152.78%14.44%23.0bp (4072240.4bp)TBP3/MA1355.1/Jaspar(0.598)
More Information | Similar Motifs Found
motif file (matrix)
8 A G C T A G T C A G T C A C G T A C G T A G C T A C T G A C G T A C G T A G T C A T C G A T C G 1e-30-7.109e+0176.97%38.12%98.6bp (3331295.9bp)Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer(0.818)
More Information | Similar Motifs Found
motif file (matrix)
9 G A C T G C T A C G A T C A T G G A T C G A T C G T A C A C G T C A T G C T A G A G T C G T C A 1e-27-6.386e+0141.84%9.40%26.9bp (3240065.0bp)p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer(0.758)
More Information | Similar Motifs Found
motif file (matrix)
10 C G T A C G T A A C G T A C T G C T A G A G T C A G T C A G C T A C G T C T A G A G T C A G C T 1e-20-4.819e+0164.49%32.17%106.6bp (3493389.0bp)NR1H4/MA1110.1/Jaspar(0.799)
More Information | Similar Motifs Found
motif file (matrix)
11 C G A T T C G A G T A C A G C T A C G T G C A T T C G A A G C T C T A G A G C T A G C T A G T C 1e-19-4.575e+0136.85%10.41%22.5bp (3317206.3bp)cad/dmmpmm(Bergman)/fly(0.696)
More Information | Similar Motifs Found
motif file (matrix)
12 C G T A C T G A A T C G G T A C C G T A C G T A C T A G G T A C C G A T A C G T A C G T C G T A 1e-19-4.393e+0166.79%36.08%57.7bp (3797911.2bp)Nr2e3/MA0164.1/Jaspar(0.716)
More Information | Similar Motifs Found
motif file (matrix)
13 T G C A G T C A A C G T C A T G A G C T C A G T C G T A A T C G A G T C C G A T G A T C T G A C 1e-18-4.255e+0166.03%35.67%132.2bp (3652814.8bp)TEC1(MacIsaac)/Yeast(0.633)
More Information | Similar Motifs Found
motif file (matrix)
14 G T C A C T G A A G T C A G T C C A G T T A C G C G T A A G T C C T G A A G T C C T G A A C G T 1e-17-3.939e+0157.77%28.92%98.6bp (3725106.5bp)SIX1/MA1118.1/Jaspar(0.729)
More Information | Similar Motifs Found
motif file (matrix)
15 A G T C A C G T A G T C A C G T A G T C A C T G A C G T A C T G A C T G A G T C C G T A C G T A 1e-17-3.934e+0148.37%20.72%95.0bp (3352899.9bp)bZIP16/MA1349.1/Jaspar(0.695)
More Information | Similar Motifs Found
motif file (matrix)
16 A G T C A C T G A C T G A C T G C G T A A G T C C G T A C G T A C G T A A C G T C G T A A G T C 1e-16-3.828e+0147.60%20.53%76.3bp (3566678.6bp)Unknown4/Drosophila-Promoters/Homer(0.614)
More Information | Similar Motifs Found
motif file (matrix)
17 A C T G A C G T A G T C C T G A A C G T C G T A A C T G A G T C A G T C A C G T 1e-13-3.017e+0144.72%21.02%31.7bp (3463198.9bp)RARB(var.3)/MA1552.1/Jaspar(0.650)
More Information | Similar Motifs Found
motif file (matrix)
18 A C G T A G T C A G T C C T G A A T C G T A G C A G T C C G T A C G T A A G C T C G A T C T A G 1e-12-2.902e+0143.19%20.18%92.6bp (3339646.6bp)NFY(CCAAT)/Promoter/Homer(0.674)
More Information | Similar Motifs Found
motif file (matrix)
19 * C G T A A C T G C G T A A G T C A G T C A G C T A C T G A C G T A C T G A G T C 1e-11-2.597e+0144.34%22.29%11.3bp (3290640.4bp)Ptf1a(var.3)/MA1620.1/Jaspar(0.722)
More Information | Similar Motifs Found
motif file (matrix)
20 * C T A G A G C T C G T A G T C A T C G A A C T G G T C A C G T A C G T A A C G T G T C A C T A G 1e-7-1.708e+0144.15%26.50%143.5bp (3730660.9bp)FKH1/MA0296.1/Jaspar(0.695)
More Information | Similar Motifs Found
motif file (matrix)
21 * C G T A A C T G A G T C C G T A A C G T A C G T A G T C A G T C C T G A A G T C 1e-7-1.707e+0148.37%30.39%43.4bp (3508618.8bp)TEAD3/MA0808.1/Jaspar(0.802)
More Information | Similar Motifs Found
motif file (matrix)
22 * A C T G A G T C C G T A C G T A C G T A C G T A A G T C A C G T A C T G A G T C 1e-6-1.554e+0147.98%30.80%86.2bp (3305513.4bp)Ng_0261(RRM)/Naegleria_gruberi-RNCMPT00261-PBM/HughesRNA(0.726)
More Information | Similar Motifs Found
motif file (matrix)
23 * C G A T T A G C A C G T C G A T C G T A A T C G G T A C C G T A A T C G T G A C 1e0-1.705e-0246.83%53.90%23.5bp (3658767.1bp)pan/dmmpmm(Papatsenko)/fly(0.700)
More Information | Similar Motifs Found
motif file (matrix)
24 * T A G C A G T C G A C T A G C T A G C T T A G C G T A C G T A C G C A T T G A C C A G T G C T A 1e0-1.423e-0326.30%35.60%23.9bp (3280128.3bp)PCBP1(KH)/Mus_musculus-RNCMPT00239-PBM/HughesRNA(0.660)
More Information | Similar Motifs Found
motif file (matrix)
25 * C T A G T G A C A T G C C G T A C G A T C A G T A G T C A C G T C A G T C G T A 1e0-0.000e+000.58%60.77%29.9bp (3678371.5bp)FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer(0.679)
More Information | Similar Motifs Found
motif file (matrix)
26 * A C G T A G T C A G T C A C G T C G A T C G T A A C G T A C G T 1e0-0.000e+0063.53%81.21%66.7bp (3770715.9bp)ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap(0.786)
More Information | Similar Motifs Found
motif file (matrix)
27 * C T G A A C T G A G C T A C T G A C G T C G T A A G T C A G T C 1e0-0.000e+0044.91%66.10%87.9bp (3519916.8bp)MAL13P1.35(RRM)/Plasmodium_falciparum-RNCMPT00234-PBM/HughesRNA(0.826)
More Information | Similar Motifs Found
motif file (matrix)
28 * A C G T C G T A A C T G A G T C A C G T A G T C A G T C A G T C 1e0-0.000e+0047.41%74.04%22.5bp (3516787.3bp)POL013.1_MED-1/Jaspar(0.783)
More Information | Similar Motifs Found
motif file (matrix)
29 * A C T G A C T G A C G T A G T C A G T C C G T A C G T A A C T G 1e0-0.000e+0047.22%74.29%30.5bp (3415401.5bp)NRG1(MacIsaac)/Yeast(0.680)
More Information | Similar Motifs Found
motif file (matrix)
30 * C G T A A G T C A C G T A C T G A G T C A C G T A C T G A C T G 1e0-0.000e+0048.18%79.20%94.4bp (3277510.7bp)SWI5(MacIsaac)/Yeast(0.828)
More Information | Similar Motifs Found
motif file (matrix)