Homer de novo Motif Results (motif_combined/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 319
Total background sequences = 48221
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C T G A C G T A C G T C T G A A C T G C G T A G T A C A G C T A G T C A C G T A C G T A G T C 1e-75-1.739e+0210.66%0.03%46.2bp (54.8bp)POL008.1_DCE_S_I/Jaspar(0.630)
More Information | Similar Motifs Found
motif file (matrix)
2 T A G C C T G A C T A G G T C A A C G T A C T G G A C T A C G T T A C G A C T G 1e-55-1.283e+0234.80%5.62%45.2bp (64.9bp)ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer(0.828)
More Information | Similar Motifs Found
motif file (matrix)
3 A C G T A C T G A C T G A G T C A G T C A C T G C G T A A C G T A C T G C G T A A C T G C G T A 1e-55-1.272e+025.64%0.00%9.0bp (0.0bp)NFY(CCAAT)/Promoter/Homer(0.653)
More Information | Similar Motifs Found
motif file (matrix)
4 A C T G A C T G C G T A A C T G A G T C C T G A A C T G A C T G A G T C A G T C C G T A A C G T 1e-53-1.221e+025.96%0.01%32.6bp (21.3bp)ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer(0.614)
More Information | Similar Motifs Found
motif file (matrix)
5 A C T G C G T A A C T G C G T A A C G T A G T C A C G T A C T G A C T G A G T C A C G T A C T G 1e-51-1.192e+025.33%0.00%69.7bp (0.7bp)Hand1::Tcf3/MA0092.1/Jaspar(0.658)
More Information | Similar Motifs Found
motif file (matrix)
6 A T C G T G C A A G T C A C G T A G T C C G T A A G T C A G T C G T C A G C T A C T G A A T C G 1e-51-1.188e+0211.60%0.20%50.5bp (59.0bp)SD0001.1_at_AC_acceptor/Jaspar(0.684)
More Information | Similar Motifs Found
motif file (matrix)
7 A C T G A C T G C G T A C T A G C G T A A C G T A G T C A C T G A G T C G T C A A T C G C T A G 1e-50-1.173e+027.21%0.02%32.7bp (56.9bp)NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer(0.660)
More Information | Similar Motifs Found
motif file (matrix)
8 A T G C A C T G A G T C A C G T A C G T A G T C G T C A C G T A C G T A A C G T 1e-50-1.169e+029.09%0.07%29.6bp (75.1bp)POL008.1_DCE_S_I/Jaspar(0.724)
More Information | Similar Motifs Found
motif file (matrix)
9 A G C T A C G T C G A T A C G T A G C T A C G T A T G C A G T C G T C A C T A G T A G C C T G A 1e-49-1.150e+0212.85%0.34%18.0bp (66.9bp)NFATC2/MA0152.1/Jaspar(0.783)
More Information | Similar Motifs Found
motif file (matrix)
10 A C G T G T C A A C G T A C G T A C G T A C T G T C G A A G T C A G T C C G A T A C T G T G C A 1e-45-1.054e+028.46%0.07%43.2bp (58.0bp)Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer(0.666)
More Information | Similar Motifs Found
motif file (matrix)
11 C G T A A C T G A C G T C G T A A T C G C G T A A C T G A C G T A C G T A C T G A C T G A G T C 1e-44-1.018e+026.27%0.02%29.5bp (32.8bp)MYB/MA0100.3/Jaspar(0.612)
More Information | Similar Motifs Found
motif file (matrix)
12 C G T A A C T G A G T C C T G A T A G C T G C A T C G A T G C A G T A C C G A T G T A C G T A C 1e-42-9.755e+0119.12%1.78%28.3bp (64.7bp)PB0130.1_Gm397_2/Jaspar(0.635)
More Information | Similar Motifs Found
motif file (matrix)
13 C G T A A C T G A C T G A C G T A C T G A G T C A C G T A C T G G T C A A T G C A G T C A G T C 1e-42-9.731e+016.27%0.02%42.5bp (89.2bp)MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer(0.730)
More Information | Similar Motifs Found
motif file (matrix)
14 A C G T A C T G A T C G A G T C C G T A G T C A T G C A A T C G T C G A A C T G G T C A T A C G 1e-39-9.208e+016.27%0.03%14.6bp (54.6bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.661)
More Information | Similar Motifs Found
motif file (matrix)
15 A G T C A C G T A C T G A G T C C G T A C G T A C G T A A C T G A C G T C G T A C G T A A C T G 1e-38-8.804e+014.08%0.00%8.9bp (0.0bp)NFIC/MA0161.2/Jaspar(0.639)
More Information | Similar Motifs Found
motif file (matrix)
16 T C A G C G T A A T G C A C G T T A G C A G T C G C T A C T A G A T C G A T G C T G A C G T A C 1e-38-8.766e+0110.34%0.31%47.6bp (63.4bp)PB0203.1_Zfp691_2/Jaspar(0.653)
More Information | Similar Motifs Found
motif file (matrix)
17 A G T C A C T G G T A C G T A C A T G C C G T A A C G T A G T C A G T C C G T A 1e-37-8.692e+017.21%0.07%13.7bp (69.8bp)GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer(0.649)
More Information | Similar Motifs Found
motif file (matrix)
18 C T G A C G A T C T A G C T G A C T G A G T C A T G A C C G T A G A T C G T A C C T G A C T G A 1e-37-8.620e+015.33%0.02%31.1bp (24.7bp)PB0148.1_Mtf1_2/Jaspar(0.657)
More Information | Similar Motifs Found
motif file (matrix)
19 A C G T A G T C A G T C C T G A C G T A A C T G C G T A C G T A A C G T C A G T 1e-37-8.620e+019.72%0.26%39.4bp (61.5bp)Stat5a::Stat5b/MA0519.1/Jaspar(0.758)
More Information | Similar Motifs Found
motif file (matrix)
20 A C G T G T A C A C G T A C T G C G T A C G A T A C T G C G T A C G T A A C T G 1e-35-8.224e+019.40%0.26%33.4bp (61.6bp)Stat6/MA0520.1/Jaspar(0.663)
More Information | Similar Motifs Found
motif file (matrix)
21 C G T A C G T A A G T C A G T C A G T C A C T G A C T G A C T G A G T C A C G T A C G T A C G T 1e-34-8.042e+013.76%0.00%45.5bp (0.0bp)PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer(0.640)
More Information | Similar Motifs Found
motif file (matrix)
22 A C T G C G T A A C G T A G T C A G T C C G T A C T G A A G T C A G C T A C G T C G T A A C T G 1e-34-8.042e+013.76%0.00%34.4bp (23.4bp)RHOXF1/MA0719.1/Jaspar(0.559)
More Information | Similar Motifs Found
motif file (matrix)
23 C G T A A C T G C G T A A T C G C G T A A C T G A C T G A C G T A C T G C G A T A G T C A G C T 1e-34-7.923e+016.90%0.08%76.9bp (64.5bp)PB0117.1_Eomes_2/Jaspar(0.704)
More Information | Similar Motifs Found
motif file (matrix)
24 A C G T C G T A A G T C C G T A A C G T A G T C C G T A A C G T A C T G A C T G A C T G A C G T 1e-34-7.903e+014.08%0.01%8.9bp (26.4bp)ZNF143/MA0088.2/Jaspar(0.692)
More Information | Similar Motifs Found
motif file (matrix)
25 A C G T C G T A G T A C C T G A A C G T T G A C C G T A A T G C C G T A C G T A A C G T A C G T 1e-34-7.855e+015.64%0.03%16.4bp (48.2bp)PB0165.1_Sox11_2/Jaspar(0.712)
More Information | Similar Motifs Found
motif file (matrix)
26 A G T C C G A T T C A G T A C G C G T A C T A G G T A C C G T A T A C G G T C A C G T A G C T A 1e-33-7.779e+0114.42%1.20%50.4bp (63.3bp)ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer(0.725)
More Information | Similar Motifs Found
motif file (matrix)
27 A G T C A C G T A C G T C G A T A C G T C G T A A C T G A G T C A G T C A G T C 1e-31-7.276e+015.96%0.06%37.1bp (65.7bp)BARHL2/MA0635.1/Jaspar(0.604)
More Information | Similar Motifs Found
motif file (matrix)
28 C G T A A T C G A G T C A T C G G T A C A C G T A T G C G T C A 1e-30-7.034e+0117.87%2.48%58.6bp (64.8bp)PB0099.1_Zfp691_1/Jaspar(0.721)
More Information | Similar Motifs Found
motif file (matrix)
29 A G T C G T A C G T C A C T A G A T C G A C G T G T A C T C G A A T C G A C G T 1e-30-6.960e+0125.08%5.42%58.5bp (63.0bp)SD0001.1_at_AC_acceptor/Jaspar(0.688)
More Information | Similar Motifs Found
motif file (matrix)
30 A G T C C G T A A T C G C G T A A C T G A G T C A C T G A C G T A C G T C G T A 1e-29-6.871e+015.64%0.06%71.0bp (62.4bp)ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer(0.610)
More Information | Similar Motifs Found
motif file (matrix)
31 C T G A A C G T C A T G C G T A C A G T A G C T A C G T C A T G C T A G G T A C 1e-28-6.581e+0112.23%1.02%53.9bp (64.0bp)NFIX/MA0671.1/Jaspar(0.682)
More Information | Similar Motifs Found
motif file (matrix)
32 A C T G A C G T A G T C A G T C A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T 1e-28-6.543e+013.13%0.00%10.2bp (38.1bp)SD0002.1_at_AC_acceptor/Jaspar(0.731)
More Information | Similar Motifs Found
motif file (matrix)
33 C G T A A T C G A C G T C G T A A C G T G T C A A C T G A G T C 1e-28-6.537e+0110.03%0.58%45.9bp (55.2bp)Arid5a/MA0602.1/Jaspar(0.556)
More Information | Similar Motifs Found
motif file (matrix)
34 A C T G C G T A G T C A A G T C A C T G C G T A A T G C A G T C 1e-26-6.024e+018.15%0.35%39.9bp (66.5bp)NR1H4/MA1110.1/Jaspar(0.676)
More Information | Similar Motifs Found
motif file (matrix)
35 A C T G C G T A C G T A A G T C A G T C A C T G A G T C A C G T A G T C A C T G 1e-25-5.808e+012.82%0.00%0.0bp (0.0bp)BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer(0.608)
More Information | Similar Motifs Found
motif file (matrix)
36 A C T G A C G T C T G A C G T A A C T G A C G T C A T G A C G T 1e-23-5.325e+0113.17%1.75%26.3bp (60.1bp)NKX3-2/MA0122.2/Jaspar(0.754)
More Information | Similar Motifs Found
motif file (matrix)
37 A G T C C G T A A C T G A C T G A C T G A C T G A C G T A G T C A C T G C G T A 1e-22-5.185e+012.82%0.00%0.0bp (30.5bp)PB0030.1_Hnf4a_1/Jaspar(0.759)
More Information | Similar Motifs Found
motif file (matrix)
38 C G T A A G T C A C G T C G T A C G T A A G T C A G T C A C G T A G T C A C G T 1e-22-5.185e+012.82%0.00%0.0bp (25.6bp)SD0001.1_at_AC_acceptor/Jaspar(0.695)
More Information | Similar Motifs Found
motif file (matrix)
39 C T G A G T C A A C T G A C T G A C T G C G T A C G T A A G T C 1e-21-4.925e+0113.48%2.06%43.3bp (61.9bp)ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer(0.706)
More Information | Similar Motifs Found
motif file (matrix)
40 A C G T A G T C A G T C A C T G A T C G C G T A A C G T A C T G 1e-18-4.361e+018.78%0.85%41.7bp (66.0bp)PB0077.1_Spdef_1/Jaspar(0.877)
More Information | Similar Motifs Found
motif file (matrix)
41 C G T A G T C A G C T A A G T C A G T C C G T A C G T A G T C A 1e-17-4.142e+0120.38%5.82%71.4bp (73.4bp)RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer(0.753)
More Information | Similar Motifs Found
motif file (matrix)
42 G T A C C G T A T G C A A C G T A G T C A G T C T C A G A C G T 1e-17-3.942e+0119.44%5.55%37.6bp (61.6bp)PH0035.1_Gsc/Jaspar(0.710)
More Information | Similar Motifs Found
motif file (matrix)
43 C G T A A T G C A C T G A C G T A C G T A G T C A C G T C G T A 1e-16-3.900e+019.40%1.21%37.1bp (63.1bp)PB0194.1_Zbtb12_2/Jaspar(0.809)
More Information | Similar Motifs Found
motif file (matrix)
44 C G T A A C T G A C T G C G T A G T C A A C T G A C G T C G T A 1e-15-3.513e+0111.29%2.10%61.5bp (62.6bp)ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer(0.898)
More Information | Similar Motifs Found
motif file (matrix)
45 C T G A G T C A A G C T C G A T A T G C G T A C A T C G A G T C 1e-13-3.184e+0111.91%2.62%45.7bp (70.7bp)ETV6/MA0645.1/Jaspar(0.809)
More Information | Similar Motifs Found
motif file (matrix)
46 * A C T G A C T G A G T C A G T C A C G T A G T C A C T G A G T C 1e-11-2.756e+016.27%0.75%21.5bp (74.7bp)ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(0.808)
More Information | Similar Motifs Found
motif file (matrix)